Genetic programming

Genetic programming (GP) is an evolutionary algorithm based methodology inspired by biological evolution to find computer programs that perform a user-defined task. It is a specialization of genetic algorithms where each individual is a computer program. Therefore it is a machine learning technique used to optimize a population of computer programs according to a fitness landscape determined by a program's ability to perform a given computational task. The roots of GP begin with the evolutionary algorithms first utilized by Nils Aall Barricelli in 1954 as applied to evolutionary simulations but evolutionary algorithms became widely recognized as optimization methods as a result of the work of Ingo Rechenberg in the 1960s and early 1970s - his group was able to solve complex engineering problems through evolution strategies (1971 PhD thesis and resulting 1973 book). Also highly influential was the work of John Holland in the early 1970s, and particularly his 1975 book. The first results on the GP methodology were reported by Stephen F. Smith (1980)^[1] and Nichael L. Cramer (1985),^[2]. In 1981 Forsyth reported the evolution of small programs in forensic science for the UK police. John R. Koza is a main proponent of GP and has pioneered the application of genetic programming in various complex optimization and search problems ^[3].

GP is very computationally intensive and so in the 1990s it was mainly used to solve relatively simple problems. But more recently, thanks to improvements in GP technology and to the exponential growth in CPU power, GP produced many novel and outstanding results in areas such as quantum computing, electronic design, game playing, sorting, searching and many more.^[4] These results include the replication or development of several post-year-2000 inventions. GP has also been applied to evolvable hardware as well as computer programs. There are several GP patents listed in the web site ^[5].

Developing a theory for GP has been very difficult and so in the 1990s GP was considered a sort of outcast among search techniques. But after a series of breakthroughs in the early 2000s, the theory of GP has had a formidable and rapid development. So much so that it has been possible to build exact probabilistic models of GP (schema theories and Markov chain models).^{[citation needed]}

Contents [hide] 1 Chromosome representation 2 Genetic operators 2.1 Crossover 2.2 Mutation 3 Meta-Genetic Programming 4 Notes 5 See also 6 Bibliography 7 External links

Chromosome representation

A function represented as a tree structure

GP evolves computer programs, traditionally represented in memory as tree structures. Trees can be easily evaluated in a recursive manner. Every tree node has an operator function and every terminal node has an operand, making mathematical expressions easy to evolve and evaluate. Thus traditionally GP favors the use of programming languages that naturally embody tree structures (for example, Lisp; other functional programming languages are also suitable).

Non-tree representations have been suggested and successfully implemented, such as the simpler linear genetic programming which suits the more traditional imperative languages [see, for example, Banzhaf et al. (1998)]. The commercial GP software Discipulus,^[6] uses AIM, automatic induction of binary machine code^[7] to achieve better performance.^[8] MicroGP^[9] uses a representation similar to linear GP to generate programs that fully exploit the syntax of a given assembly language.

Genetic operators

Crossover

The main operators used in evolutionary algorithms such as GP are crossover and mutation. Crossover is applied on an individual by simply switching one of its nodes with another node from another individual in the population. With a tree-based representation, replacing a node means replacing the whole branch. This adds greater effectiveness to the crossover operator. The expressions resulting from crossover are very much different from their initial parents.

The following code suggests a simple implementation of individual deformation using crossover:

individual. Children[randomChildIndex] = otherIndividual.Children[randomChildIndex];

Mutation

Mutation affects an individual in the population. It can replace a whole node in the selected individual, or it can replace just the node's information. To maintain integrity, operations must be fail-safe or the type of information the node holds must be taken into account. For example, mutation must be aware of binary operation nodes, or the operator must be able to handle missing values.

A simple piece of code:

individual. Information = randomInformation;

or

individual = generateNewIndividual;

Meta-Genetic Programming

Meta-Genetic Programming is the proposed meta learning technique of evolving a genetic programming system using genetic programming itself. ^[10]. It suggests that chromosomes, crossover, and mutation were themselves evolved, therefore like their real life counterparts should be allowed to change on their own rather than being determined by a human programmer. Meta-GP was proposed by Jürgen Schmidhuber in 1987 ^[11]; it is a recursive but terminating algorithm, allowing it to avoid infinite recursion.

Critics of this idea often say this approach is overly broad in scope. However, it might be possible to constrain the fitness criterion onto a general class of results, and so obtain an evolved GP that would more efficiently produce results for sub-classes. This might take the form of a Meta evolved GP for producing human walking algorithms which is then used to evolve human running, jumping, etc. The fitness criterion applied to the Meta GP would simply be one of efficiency.

For general problem classes there may be no way to show that Meta GP will reliably produce results more efficiently than a created algorithm other than exhaustion. The same holds for standard GP and other search algorithms, of course.

Otra referencia Util ( tut GP)

Genetic programming is a branch of genetic algorithms. The main difference between genetic programming and genetic algorithms is the representation of the solution. Genetic programming creates computer programs in the lisp or scheme computer languages as the solution. Genetic algorithms create a string of numbers that represent the solution. Genetic programming, uses four steps to solve problems:
1) Generate an initial population of random compositions of the functions and terminals of the problem (computer programs).

2) Execute each program in the population and assign it a fitness value according to how well it solves the problem.

3) Create a new population of computer programs.
i) Copy the best existing programs
ii) Create new computer programs by mutation.
iii) Create new computer programs by crossover(sexual reproduction).

4) The best computer program that appeared in any generation, the best-so-far solution, is designated as the result of genetic programming [Koza 1992].

Figure 1: genetic programming Flowchart.

Fitness Function
The most difficult and most important concept of genetic programming is the fitness function. The fitness function determines how well a program is able to solve the problem. It varies greatly from one type of program to the next. For example, if one were to create a genetic program to set the time of a clock, the fitness function would simply be the amount of time that the clock is wrong. Unfortunately, few problems have such an easy fitness function; most cases require a slight modification of the problem in order to find the fitness.


Gun Firing Program
A more complicated example consists of training a genetic program to fire a gun to hit a moving target. The fitness function is the distance that the bullet is off from the target. The program has to learn to take into account a number of variables, such as wind velocity, type of gun used, distance to the target, height of the target, velocity and acceleration of the target. This problem represents the type of problem for which genetic programs are best. It is a simple fitness function with a large number of variables.

Water Sprinkler System
Consider a program to control the flow of water through a system of water sprinklers. The fitness function is the correct amount of water evenly distributed over the surface. Unfortunately, there is no one variable encompassing this measurement. Thus, the problem must be modified to find a numerical fitness. One possible solution is placing water-collecting measuring devices at certain intervals on the surface. The fitness could then be the standard deviation in water level from all the measuring devices. Another possible fitness measure could be the difference between the lowest measured water level and the ideal amount of water; however, this number would not account in any way the water marks at other measuring devices, which may not be at the ideal mark.

Maze Solving Program
If one were to create a program to find the solution to a maze, first, the program would have to be trained with several known mazes. The ideal solution from the start to finish of the maze would be described by a path of dots. The fitness in this case would be the number of dots the program is able to find. In order to prevent the program from wandering around the maze too long, a time limit is implemented along with the fitness function.


Functions and Terminals
The terminal and function sets are also important components of genetic programming. The terminal and function sets are the alphabet of the programs to be made. The terminal set consists of the variables and constants of the programs. In the maze example, the terminal set would contain three commands: forward, right and left. The function set consists of the functions of the program. In the maze example the function set would contain: If "dot" then do x else do y. In the gun firing program is the terminal set would be composed of the different variables of the problem. Some of these variables could be the velocities and accelerations of the gun, the bullet and target. The functions are several mathematical functions, such as addition, subtraction, division, multiplication and other more complex functions.

Crossover Operation
Two primary operations exist for modifying structures in genetic programming. The most important one is the crossover operation. In the crossover operation, two solutions are sexually combined to form two new solutions or offspring. The parents are chosen from the population by a function of the fitness of the solutions. Three methods exist for selecting the solutions for the crossover operation.

The first method uses probability based on the fitness of the solution. If is the fitness of the solution Si and

is the total sum of all the members of the population, then the probability that the solution Si will be copied to the next generation is [Koza 1992]:

Another method for selecting the solution to be copied is tournament selection. Typically the genetic program chooses two solutions random. The solution with the higher fitness will win. This method simulates biological mating patterns in which, two members of the same sex compete to mate with a third one of a different sex. Finally, the third method is done by rank. In rank selection, selection is based on the rank, (not the numerical value) of the fitness values of the solutions of the population [Koza 1992].

The creation of the offsprings from the crossover operation is accomplish by deleting the crossover fragment of the first parent and then inserting the crossover fragment of the second parent. The second offspring is produced in a symmetric manner. For example consider the two S-expressions in Figure 2, written in a modified scheme programming language and represented in a tree.

Figure 2: Crossover operation for genetic programming. The bold selections on both parents are swapped to create the offspring or children. (The child on the right is the parse tree representation for the quadratic equation.)

Figure 3: This figure illustrates one of the main advantages of genetic programming over genetic algorithms. In genetic programming identical parents can yield different offspring, while in genetic algorithms identical parents would yield identical offspring. The bold selections indicate the subtrees to be swapped.

An important improvement that genetic programming displays over genetic algorithms is its ability to create two new solutions from the same solution. In the Figure 3 the same parent is used twice to create two new children.

Mutation
Mutation is another important feature of genetic programming. Two types of mutations are possible. In the first kind a function can only replace a function or a terminal can only replace a terminal. In the second kind an entire subtree can replace another subtree. Figure 4 explains the concept of mutation:

Figure 4: Two different types of mutations. The top parse tree is the original agent. The bottom left parse tree illustrates a mutation of a single terminal (2) for another single terminal (a). It also illustrates a mutation of a single function (-) for another single function (+). The parse tree on the bottom right illustrates a the replacement of a subtree by another subtree.

Summary
Genetic programming is much more powerful than genetic algorithms. The output of the genetic algorithm is a quantity, while the output of the genetic programming is a another computer program. In essence, this is the beginning of computer programs that program themselves.

Genetic programming works best for several types of problems. The first type is where there is no ideal solution, (for example, a program that drives a car). There is no one solution to driving a car. Some solutions drive safely at the expense of time, while others drive fast at a high safety risk. Therefore, driving a car consists of making compromises of speed versus safety, as well as many other variables. In this case genetic programming will find a solution that attempts to compromise and be the most efficient solution from a large list of variables.

Furthermore, genetic programming is useful in finding solutions where the variables are constantly changing. In the previous car example, the program will find one solution for a smooth concrete highway, while it will find a totally different solution for a rough unpaved road.

REFERENCES

Koza, John R. 1992. Genetic Programming: On the Programming of Computers by Means of Natural Selection. Cambridge, MA: The MIT Press.

Cramer, Nichael Lynn: "A Representation for the Adaptive Generation of Simple Sequential Programs", Proceedings, International Conference on Genetic Algorithms and their Applications, July 1985 [CMU], pp183-187.